Class Hierarchy
- java.lang.Object
- jebl.evolution.align.Align
- jebl.evolution.align.MaximalSegmentPair
- jebl.evolution.align.NeedlemanWunsch
- jebl.evolution.align.NeedlemanWunschAffine
- jebl.evolution.align.NeedlemanWunschLinearSpace
- jebl.evolution.align.NeedlemanWunschLinearSpaceAffine (implements jebl.evolution.align.PairwiseAligner)
- jebl.evolution.align.NonOverlapMultipleLocalAffine
- jebl.evolution.align.OldNeedlemanWunschAffine
- jebl.evolution.align.OverlapAlign
- jebl.evolution.align.SmithWaterman
- jebl.evolution.align.SmithWatermanLinearSpace
- jebl.evolution.align.SmithWatermanLinearSpaceAffine
- jebl.evolution.align.AlignCommand
- jebl.evolution.align.AlignmentTreeBuilderFactory
- jebl.evolution.align.AlignmentTreeBuilderFactory.Result
- jebl.evolution.align.BartonSternberg (implements jebl.evolution.align.MultipleAligner)
- jebl.evolution.distances.BasicDistanceMatrix (implements jebl.evolution.distances.DistanceMatrix)
- jebl.evolution.align.SequenceAlignmentsDistanceMatrix
- jebl.evolution.align.Output
- jebl.evolution.align.SystemOut
- jebl.evolution.align.PairwiseAligner.Result
- jebl.evolution.align.ProfileCharacter
- jebl.evolution.align.SequenceShuffler
- jebl.evolution.align.Traceback
- jebl.evolution.align.Align
Interface Hierarchy
- jebl.evolution.align.MultipleAligner
- jebl.evolution.align.PairwiseAligner
- jebl.evolution.align.TracebackPlotter