Uses of Enum Class
jebl.evolution.trees.TreeBuilderFactory.Method
Packages that use TreeBuilderFactory.Method
Package
Description
Provides classes and interfaces for pairwise alignment of two sequences.
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Uses of TreeBuilderFactory.Method in jebl.evolution.align
Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.MethodModifier and TypeMethodDescriptionAlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) AlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener) Will use model F84 for nucleotides and Jukes-Cantor for amino acidAlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) -
Uses of TreeBuilderFactory.Method in jebl.evolution.trees
Methods in jebl.evolution.trees that return TreeBuilderFactory.MethodModifier and TypeMethodDescriptionstatic TreeBuilderFactory.Method
Returns the enum constant of this class with the specified name.static TreeBuilderFactory.Method[]
TreeBuilderFactory.Method.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in jebl.evolution.trees with parameters of type TreeBuilderFactory.MethodModifier and TypeMethodDescriptionstatic ClusteringTreeBuilder
ClusteringTreeBuilder.getBuilder
(TreeBuilderFactory.Method method, DistanceMatrix distances) A factory method to create a ClusteringTreeBuilderstatic ClusteringTreeBuilder
TreeBuilderFactory.getBuilder
(TreeBuilderFactory.Method method, DistanceMatrix distances) static boolean
TreeBuilderFactory.isRootedMethod
(TreeBuilderFactory.Method method)